1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:1.94e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D428_RS16020
Response regulator NarL family
Bacillus anthracis str. Carbosap · GCF_000310045
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000310045#D428_RS16020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:1.28e-18:205:54:58- Raw architecture: Response_reg:5:1.94e-29:116:113:111#HTH_LUXR:152:1.28e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000310045::NZ_ANAO01000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7689-9438Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000310045::NZ_ANAO01000003.1::G00030Context members
D428_RS16015D428_RS16020
Partner locus tags
D428_RS16015D428_RS16020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694110.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8PAE7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8PAE7_BACANDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD428_RS16020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_ANAO01000003.1Sequence record reported by the local genomic context database.
Genomic interval8 800-9 438 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 689-9 438 ntGCF_000310045::NZ_ANAO01000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000310045::NZ_ANAO01000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ANAO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span7 689-9 438 nt1 750 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 689 nt9 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D428_RS16015GCF_000310045#D428_RS16015
HKClassic
7 689-8 795 nt · Reverse (-)
D428_RS16020GCF_000310045#D428_RS16020
RRNarLCurrent focus
8 800-9 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009669055#EKV65_RS08880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1548507
Simplified PFAM architecture for RROC_1548507
PFAM domain coverage: 167 / 224 aa (74.6%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-128] | GerE[163-217]
- Domain count: 2
- Matched identifier: RROC_1548507
- Positioned domains: Response_reg 17-128 ; Response_reg 17-128 ; GerE 163-217 ; GerE 163-217
Cluster members and taxonomy
Representative gene: GCF_009669055#EKV65_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 245 029 · GCF_000310045
AssemblyCarbosap_v1 · Contighaploid
Genome composition5 402 970 bp · 35,0% GCBacillus anthracis str. Carbosap
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key