1 Response_reg#1
7-114 aa · 108 aa · 47.8% of protein
Raw token
Response_reg:7:7.24e-30:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1367_RS12985
Response regulator OmpR family
Enterococcus faecium ERV38 · GCF_000295215
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000295215#HMPREF1367_RS12985Stable P2CS identifier used across views.
GenomeGCF_000295215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 226 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:151:3.69e-28:225:77:77- Raw architecture: Response_reg:7:7.24e-30:114:110:111#Trans_reg_C:151:3.69e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000295215::NZ_JH811453.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14798-16367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1367_02846RefSeq proteinWP_002287499.1
Context group ID
GCF_000295215::NZ_JH811453.1::G00020Context members
HMPREF1367_RS12985HMPREF1367_RS12990
Partner locus tags
HMPREF1367_RS12985HMPREF1367_RS12990
Partner old locus tags
HMPREF1367_02846HMPREF1367_02847
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002287499.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y126Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y126_ENTFDDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1367_RS12985Primary locus identifier stored in the genes table.
Old locus tagHMPREF1367_02846Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811453.1Sequence record reported by the local genomic context database.
Genomic interval14 798-15 478 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 798-16 367 ntGCF_000295215::NZ_JH811453.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295215::NZ_JH811453.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811453.1All displayed genes belong to this local TCS context.
Neighborhood span14 798-16 367 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 798 nt16 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1367_RS12985GCF_000295215#HMPREF1367_RS12985
RROmpRCurrent focus
14 798-15 478 nt · Forward (+)
HMPREF1367_RS12990GCF_000295215#HMPREF1367_RS12990
HKClassic
15 471-16 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS12375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408424
Simplified PFAM architecture for RROC_1408424
PFAM domain coverage: 181 / 226 aa (80.1%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1408424
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS12375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 825 · GCF_000295215
AssemblyASM29521v2 · Scaffoldhaploid
Genome composition2 996 739 bp · 38,0% GCEnterococcus faecium ERV38
Signal transduction countsGenes 40 · HK 19 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key