1 Response_reg#1
4-118 aa · 115 aa · 47.5% of protein
Raw token
Response_reg:4:6.42e-22:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1367_RS00275
Response regulator, unclassified
Enterococcus faecium ERV38 · GCF_000295215
ClassRRTypeunclassifiedLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000295215#HMPREF1367_RS00275Stable P2CS identifier used across views.
GenomeGCF_000295215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 242 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-188 aa · 41 aa · 16.9% of protein
Raw token
HTH_AraC:148:0.00000000123:188:41:423 HTH_AraC#3
205-239 aa · 35 aa · 14.5% of protein
Raw token
HTH_AraC:205:0.00000119:239:35:42- Raw architecture: Response_reg:4:6.42e-22:118:115:111#HTH_AraC:148:0.00000000123:188:41:42#HTH_AraC:205:0.00000119:239:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000295215::NZ_JH811300.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13854-16134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1367_00059RefSeq proteinWP_002302980.1
Context group ID
GCF_000295215::NZ_JH811300.1::G00002Context members
HMPREF1367_RS00270HMPREF1367_RS00275
Partner locus tags
HMPREF1367_RS00270HMPREF1367_RS00275
Partner old locus tags
HMPREF1367_00058HMPREF1367_00059
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002302980.1Primary protein accession used for annex mappings.
UniProt accessionE3USX8Primary UniProt accession resolved in the annex database.
UniProt IDE3USX8_ENTFCDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1367_RS00275Primary locus identifier stored in the genes table.
Old locus tagHMPREF1367_00059Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811300.1Sequence record reported by the local genomic context database.
Genomic interval15 406-16 134 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 854-16 134 ntGCF_000295215::NZ_JH811300.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295215::NZ_JH811300.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811300.1All displayed genes belong to this local TCS context.
Neighborhood span13 854-16 134 nt2 281 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 854 nt16 134 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1367_RS00270GCF_000295215#HMPREF1367_RS00270
HKClassic
13 854-15 428 nt · Forward (+)
HMPREF1367_RS00275GCF_000295215#HMPREF1367_RS00275
RRunclassifiedCurrent focus
15 406-16 134 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148325#HMPREF9524_RS08290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843601
Simplified PFAM architecture for RROC_0843601
PFAM domain coverage: 189 / 242 aa (78.1%)
1 aa242 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-117] | HTH_AraC[149-188] | HTH_AraC[205-239]
- Domain count: 3
- Matched identifier: RROC_0843601
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_AraC 149-188 ; HTH_AraC 149-188 ; HTH_AraC 205-239 ; HTH_AraC 205-239
Cluster members and taxonomy
Representative gene: GCF_000148325#HMPREF9524_RS08290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 825 · GCF_000295215
AssemblyASM29521v2 · Scaffoldhaploid
Genome composition2 996 739 bp · 38,0% GCEnterococcus faecium ERV38
Signal transduction countsGenes 40 · HK 19 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key