1 HisKA#1
162-229 aa · 68 aa · 17.3% of protein
Raw token
HisKA:162:0.0000000000000492:229:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1330_RS03965
Histidine kinase, Classic
Enterococcus faecalis ERV129 · GCF_000294045
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294045#HMPREF1330_RS03965Stable P2CS identifier used across views.
GenomeGCF_000294045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 393 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
275-386 aa · 112 aa · 28.5% of protein
Raw token
HATPase_c:275:1.29e-29:386:113:109- Raw architecture: HisKA:162:0.0000000000000492:229:68:64#HATPase_c:275:1.29e-29:386:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294045::NZ_JH806208.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26200-28060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1330_00024RefSeq proteinWP_002416346.1
Context group ID
GCF_000294045::NZ_JH806208.1::G00001Context members
HMPREF1330_RS03965HMPREF1330_RS03970
Partner locus tags
HMPREF1330_RS03965HMPREF1330_RS03970
Partner old locus tags
HMPREF1330_00024HMPREF1330_00025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002416346.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1330_RS03965Primary locus identifier stored in the genes table.
Old locus tagHMPREF1330_00024Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH806208.1Sequence record reported by the local genomic context database.
Genomic interval26 200-27 381 nt1 182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 200-28 060 ntGCF_000294045::NZ_JH806208.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294045::NZ_JH806208.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH806208.1All displayed genes belong to this local TCS context.
Neighborhood span26 200-28 060 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 200 nt28 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1330_RS03965GCF_000294045#HMPREF1330_RS03965
HKClassicCurrent focus
26 200-27 381 nt · Reverse (-)
HMPREF1330_RS03970GCF_000294045#HMPREF1330_RS03970
RROmpR
27 371-28 060 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000294045#HMPREF1330_RS03965The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503436
Simplified PFAM architecture for HKOC_2503436
PFAM domain coverage: 177 / 393 aa (45.0%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[163-228] | HATPase_c[275-385]
- Domain count: 2
- Matched identifier: HKOC_2503436
- Positioned domains: HisKA 163-228 ; HATPase_c 275-385
Cluster members and taxonomy
Representative gene: GCF_000294045#HMPREF1330_RS03965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 787 · GCF_000294045
AssemblyASM29404v1 · Scaffoldhaploid
Genome composition3 157 953 bp · 37,5% GCEnterococcus faecalis ERV129
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key