1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.0000000000112:166:138:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS23080
Histidine kinase, Classic
Bacillus cereus HuA2-1 · GCF_000293705
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293705#IG3_RS23080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFGAF_3HisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 523 aa (79.0%)Merged over positioned domains only.
Domain description1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF_3#2
203-318 aa · 116 aa · 22.2% of protein
Raw token
GAF_3:203:0.000000000977:318:123:1293 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:1.83e-20:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.0000000016:523:106:109- Raw architecture: GAF:29:0.0000000000112:166:138:133#GAF_3:203:0.000000000977:318:123:129#HisKA_3:333:1.83e-20:400:68:68#HATPase_c:433:0.0000000016:523:106:109
- Domain description: 1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293705::NZ_JH804673.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174097-176336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_04638RefSeq proteinWP_002138956.1
Context group ID
GCF_000293705::NZ_JH804673.1::G00064Context members
IG3_RS23080IG3_RS23085
Partner locus tags
IG3_RS23080IG3_RS23085
Partner old locus tags
IG3_04638IG3_04639
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002138956.1Primary protein accession used for annex mappings.
UniProt accessionJ8Y7S9Primary UniProt accession resolved in the annex database.
UniProt IDJ8Y7S9_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS23080Primary locus identifier stored in the genes table.
Old locus tagIG3_04638Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804673.1Sequence record reported by the local genomic context database.
Genomic interval174 097-175 668 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span174 097-176 336 ntGCF_000293705::NZ_JH804673.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804673.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804673.1All displayed genes belong to this local TCS context.
Neighborhood span174 097-176 336 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 097 nt176 336 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG3_RS23080GCF_000293705#IG3_RS23080
HKClassicCurrent focus
174 097-175 668 nt · Forward (+)
IG3_RS23085GCF_000293705#IG3_RS23085
RRNarL
175 689-176 336 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS23080The current gene is the representative for this cluster.
PFAM architectureGAF_2 + GAF_3 + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1380062
Simplified PFAM architecture for HKOC_1380062
PFAM domain coverage: 411 / 523 aa (78.6%)
1 aa523 aa
GAF_2GAF_3HisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF_3 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF_3[204-318] | HisKA_3[333-400] | HATPase_c[434-522]
- Domain count: 4
- Matched identifier: HKOC_1380062
- Positioned domains: GAF_2 28-166 ; GAF_3 204-318 ; HisKA_3 333-400 ; HATPase_c 434-522
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS23080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key