1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.0000000000000014:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEM_RS02145
Histidine kinase, Classic
Bacillus cereus BAG6O-2 · GCF_000293545
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293545#IEM_RS02145Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 458 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000172:303:61:643 HATPase_c#3
349-437 aa · 89 aa · 19.4% of protein
Raw token
HATPase_c:349:3.4e-18:437:92:109- Raw architecture: HAMP:165:0.0000000000000014:232:68:69#HisKA:244:0.00000000000172:303:61:64#HATPase_c:349:3.4e-18:437:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293545::NZ_JH804628.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span428590-430606Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEM_00438RefSeq proteinWP_002110371.1
Context group ID
GCF_000293545::NZ_JH804628.1::G00007Context members
IEM_RS02145IEM_RS02150
Partner locus tags
IEM_RS02145IEM_RS02150
Partner old locus tags
IEM_00438IEM_00439
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002110371.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEM_RS02145Primary locus identifier stored in the genes table.
Old locus tagIEM_00438Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804628.1Sequence record reported by the local genomic context database.
Genomic interval428 590-429 966 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span428 590-430 606 ntGCF_000293545::NZ_JH804628.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293545::NZ_JH804628.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804628.1All displayed genes belong to this local TCS context.
Neighborhood span428 590-430 606 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
428 590 nt430 606 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEM_RS02145GCF_000293545#IEM_RS02145
HKClassicCurrent focus
428 590-429 966 nt · Reverse (-)
IEM_RS02150GCF_000293545#IEM_RS02150
RROmpR
429 959-430 606 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS02145The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858764
Simplified PFAM architecture for HKOC_1858764
PFAM domain coverage: 203 / 458 aa (44.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-442]
- Domain count: 3
- Matched identifier: HKOC_1858764
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-442
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS02145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 193 · GCF_000293545
AssemblyBaci_cere_BAG60-2_G13207_V1 · Scaffoldhaploid
Genome composition5 747 228 bp · 35,0% GCBacillus cereus BAG6O-2
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key