1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:1.51e-34:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICY_RS13085
Response regulator NarL family
Bacillus cereus BAG2X1-3 · GCF_000291515
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291515#ICY_RS13085Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:2.48e-24:205:55:58- Raw architecture: Response_reg:6:1.51e-34:116:111:111#HTH_LUXR:151:2.48e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291515::NZ_JH791914.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2517106-2518853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICY_02621RefSeq proteinWP_000694622.1
Context group ID
GCF_000291515::NZ_JH791914.1::G00027Context members
ICY_RS13085ICY_RS13090
Partner locus tags
ICY_RS13085ICY_RS13090
Partner old locus tags
ICY_02621ICY_02622
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694622.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A8PU36Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A8PU36_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICY_RS13085Primary locus identifier stored in the genes table.
Old locus tagICY_02621Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791914.1Sequence record reported by the local genomic context database.
Genomic interval2 517 106-2 517 741 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 517 106-2 518 853 ntGCF_000291515::NZ_JH791914.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291515::NZ_JH791914.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791914.1All displayed genes belong to this local TCS context.
Neighborhood span2 517 106-2 518 853 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 517 106 nt2 518 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICY_RS13085GCF_000291515#ICY_RS13085
RRNarLCurrent focus
2 517 106-2 517 741 nt · Reverse (-)
ICY_RS13090GCF_000291515#ICY_RS13090
HKClassic
2 517 756-2 518 853 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291515#ICY_RS13085The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2003880
Simplified PFAM architecture for RROC_2003880
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2003880
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000291515#ICY_RS13085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 181 · GCF_000291515
AssemblyBaci_cere_BAG2X1-3_G13211_V1 · Scaffoldhaploid
Genome composition5 250 571 bp · 35,5% GCBacillus cereus BAG2X1-3
Signal transduction countsGenes 98 · HK 53 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key