1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:7.96e-26:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICW_RS18750
Response regulator OmpR family
Bacillus wiedmannii · GCF_000291495
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291495#ICW_RS18750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:147:3.81e-24:222:77:77- Raw architecture: Response_reg:4:7.96e-26:112:110:111#Trans_reg_C:147:3.81e-24:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291495::NZ_JH791910.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3641923-3643613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICW_03767RefSeq proteinWP_000720522.1
Context group ID
GCF_000291495::NZ_JH791910.1::G00043Context members
ICW_RS18745ICW_RS18750
Partner locus tags
ICW_RS18745ICW_RS18750
Partner old locus tags
ICW_03766ICW_03767
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000720522.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7WC60Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7WC60_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICW_RS18750Primary locus identifier stored in the genes table.
Old locus tagICW_03767Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791910.1Sequence record reported by the local genomic context database.
Genomic interval3 642 942-3 643 613 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 641 923-3 643 613 ntGCF_000291495::NZ_JH791910.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291495::NZ_JH791910.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791910.1All displayed genes belong to this local TCS context.
Neighborhood span3 641 923-3 643 613 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 641 923 nt3 643 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICW_RS18745GCF_000291495#ICW_RS18745
HKClassic
3 641 923-3 642 945 nt · Reverse (-)
ICW_RS18750GCF_000291495#ICW_RS18750
RROmpRCurrent focus
3 642 942-3 643 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291495#ICW_RS18750The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588553
Simplified PFAM architecture for RROC_1588553
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1588553
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000291495#ICW_RS18750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000291495
AssemblyBaci_cere_BAG2X1-2_G13195_V1 · Scaffoldhaploid
Genome composition5 589 654 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key