1 HAMP#1
104-174 aa · 71 aa · 17.6% of protein
Raw token
HAMP:104:0.000000000113:174:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEI_RS27315
Histidine kinase, Classic
Bacillus wiedmannii · GCF_000291375
ClassHKTypeClassicLength403 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291375#IEI_RS27315Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length403 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 403 aa (61.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa403 aa
Domain-by-domain annotation3 items
2 HisKA#2
178-244 aa · 67 aa · 16.6% of protein
Raw token
HisKA:178:0.00000000000164:244:67:643 HATPase_c#3
286-395 aa · 110 aa · 27.3% of protein
Raw token
HATPase_c:286:1.45e-29:395:110:109- Raw architecture: HAMP:104:0.000000000113:174:71:69#HisKA:178:0.00000000000164:244:67:64#HATPase_c:286:1.45e-29:395:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291375::NZ_JH791977.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35362-37201Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEI_05479RefSeq proteinWP_002109050.1
Context group ID
GCF_000291375::NZ_JH791977.1::G00070Context members
IEI_RS27310IEI_RS27315
Partner locus tags
IEI_RS27310IEI_RS27315
Partner old locus tags
IEI_05478IEI_05479
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002109050.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEI_RS27315Primary locus identifier stored in the genes table.
Old locus tagIEI_05479Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791977.1Sequence record reported by the local genomic context database.
Genomic interval36 179-37 201 nt1 023 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 362-37 201 ntGCF_000291375::NZ_JH791977.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291375::NZ_JH791977.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791977.1All displayed genes belong to this local TCS context.
Neighborhood span35 362-37 201 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 362 nt37 201 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEI_RS27310GCF_000291375#IEI_RS27310
RROmpR
35 362-36 051 nt · Forward (+)
IEI_RS27315GCF_000291375#IEI_RS27315
HKClassicCurrent focus
36 179-37 201 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS27315The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2415318
Simplified PFAM architecture for HKOC_2415318
PFAM domain coverage: 228 / 403 aa (56.6%)
1 aa403 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[122-173] | HisKA[179-244] | HATPase_c[287-396]
- Domain count: 3
- Matched identifier: HKOC_2415318
- Positioned domains: HAMP 122-173 ; HisKA 179-244 ; HATPase_c 287-396
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS27315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000291375
AssemblyBaci_cere_BAG5X2-1_G13204_V1 · Scaffoldhaploid
Genome composition5 855 291 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key