1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:8.13e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEI_RS16935
Response regulator NarL family
Bacillus wiedmannii · GCF_000291375
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291375#IEI_RS16935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:1.16e-18:205:54:58- Raw architecture: Response_reg:5:8.13e-29:116:113:111#HTH_LUXR:152:1.16e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291375::NZ_JH791975.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3279428-3281171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEI_03434RefSeq proteinWP_000694104.1
Context group ID
GCF_000291375::NZ_JH791975.1::G00038Context members
IEI_RS16930IEI_RS16935
Partner locus tags
IEI_RS16930IEI_RS16935
Partner old locus tags
IEI_03433IEI_03434
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694104.1Primary protein accession used for annex mappings.
UniProt accessionA0A0J7DA08Primary UniProt accession resolved in the annex database.
UniProt IDA0A0J7DA08_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEI_RS16935Primary locus identifier stored in the genes table.
Old locus tagIEI_03434Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791975.1Sequence record reported by the local genomic context database.
Genomic interval3 280 533-3 281 171 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 279 428-3 281 171 ntGCF_000291375::NZ_JH791975.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291375::NZ_JH791975.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791975.1All displayed genes belong to this local TCS context.
Neighborhood span3 279 428-3 281 171 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 279 428 nt3 281 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEI_RS16930GCF_000291375#IEI_RS16930
HKClassic
3 279 428-3 280 528 nt · Reverse (-)
IEI_RS16935GCF_000291375#IEI_RS16935
RRNarLCurrent focus
3 280 533-3 281 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS16935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1986451
Simplified PFAM architecture for RROC_1986451
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_1986451
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-205 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS16935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000291375
AssemblyBaci_cere_BAG5X2-1_G13204_V1 · Scaffoldhaploid
Genome composition5 855 291 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key