1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:1.17e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II3_RS23440
Response regulator OmpR family
Bacillus cereus MC67 · GCF_000291155
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291155#II3_RS23440Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 215 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-210 aa · 71 aa · 33.0% of protein
Raw token
Trans_reg_C:140:2.78e-28:210:76:77- Raw architecture: Response_reg:3:1.17e-33:112:111:111#Trans_reg_C:140:2.78e-28:210:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291155::NZ_JH792114.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1908705-1910721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII3_04702RefSeq proteinWP_002110372.1
Context group ID
GCF_000291155::NZ_JH792114.1::G00056Context members
II3_RS23440II3_RS23445
Partner locus tags
II3_RS23440II3_RS23445
Partner old locus tags
II3_04702II3_04703
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002110372.1Primary protein accession used for annex mappings.
UniProt accessionJ8EDK8Primary UniProt accession resolved in the annex database.
UniProt IDJ8EDK8_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII3_RS23440Primary locus identifier stored in the genes table.
Old locus tagII3_04702Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792114.1Sequence record reported by the local genomic context database.
Genomic interval1 908 705-1 909 352 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 908 705-1 910 721 ntGCF_000291155::NZ_JH792114.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291155::NZ_JH792114.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792114.1All displayed genes belong to this local TCS context.
Neighborhood span1 908 705-1 910 721 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 908 705 nt1 910 721 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
II3_RS23440GCF_000291155#II3_RS23440
RROmpRCurrent focus
1 908 705-1 909 352 nt · Forward (+)
II3_RS23445GCF_000291155#II3_RS23445
HKClassic
1 909 345-1 910 721 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS23440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1907248
Simplified PFAM architecture for RROC_1907248
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1907248
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS23440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 219 · GCF_000291155
AssemblyBaci_cere_MC67_V1 · Scaffoldhaploid
Genome composition5 909 232 bp · 35,5% GCBacillus cereus MC67
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key