1 Response_reg#1
5-115 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:5:2.5e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGW_RS13420
Response regulator OmpR family
Bacillus cereus ISP3191 · GCF_000291135
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291135#IGW_RS13420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 227 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 32.2% of protein
Raw token
Trans_reg_C:153:1.9e-32:225:74:77- Raw architecture: Response_reg:5:2.5e-35:115:111:111#Trans_reg_C:153:1.9e-32:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291135::NZ_JH792131.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2535625-2537670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGW_02640RefSeq proteinWP_000504574.1
Context group ID
GCF_000291135::NZ_JH792131.1::G00027Context members
IGW_RS13415IGW_RS13420
Partner locus tags
IGW_RS13415IGW_RS13420
Partner old locus tags
IGW_02639IGW_02640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000504574.1Primary protein accession used for annex mappings.
UniProt accessionA0A242W5C3Primary UniProt accession resolved in the annex database.
UniProt IDA0A242W5C3_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGW_RS13420Primary locus identifier stored in the genes table.
Old locus tagIGW_02640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792131.1Sequence record reported by the local genomic context database.
Genomic interval2 536 987-2 537 670 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 535 625-2 537 670 ntGCF_000291135::NZ_JH792131.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291135::NZ_JH792131.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792131.1All displayed genes belong to this local TCS context.
Neighborhood span2 535 625-2 537 670 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 535 625 nt2 537 670 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGW_RS13415GCF_000291135#IGW_RS13415
HKClassic
2 535 625-2 536 983 nt · Reverse (-)
IGW_RS13420GCF_000291135#IGW_RS13420
RROmpRCurrent focus
2 536 987-2 537 670 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS10645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354010
Simplified PFAM architecture for RROC_1354010
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1354010
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS10645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 216 · GCF_000291135
AssemblyBaci_cere_ISP3191_V1 · Scaffoldhaploid
Genome composition5 371 123 bp · 35,0% GCBacillus cereus ISP3191
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key