1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:5.31e-16:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGW_RS01125
Histidine kinase, Classic
Bacillus cereus ISP3191 · GCF_000291135
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291135#IGW_RS01125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 484 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:3.99e-16:319:65:643 HATPase_c#3
367-476 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:367:2.62e-30:476:110:109- Raw architecture: HAMP:174:5.31e-16:243:70:69#HisKA:255:3.99e-16:319:65:64#HATPase_c:367:2.62e-30:476:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291135::NZ_JH792131.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span198155-200300Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGW_00216RefSeq proteinWP_000023879.1
Context group ID
GCF_000291135::NZ_JH792131.1::G00005Context members
IGW_RS01125IGW_RS01130
Partner locus tags
IGW_RS01125IGW_RS01130
Partner old locus tags
IGW_00216IGW_00217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000023879.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5NQE5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5NQE5_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGW_RS01125Primary locus identifier stored in the genes table.
Old locus tagIGW_00216Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792131.1Sequence record reported by the local genomic context database.
Genomic interval198 155-199 609 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span198 155-200 300 ntGCF_000291135::NZ_JH792131.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291135::NZ_JH792131.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792131.1All displayed genes belong to this local TCS context.
Neighborhood span198 155-200 300 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 155 nt200 300 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGW_RS01125GCF_000291135#IGW_RS01125
HKClassicCurrent focus
198 155-199 609 nt · Forward (+)
IGW_RS01130GCF_000291135#IGW_RS01130
RROmpR
199 611-200 300 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161655#BTHUR0010_RS22730Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584094
Simplified PFAM architecture for HKOC_1584094
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1584094
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000161655#BTHUR0010_RS22730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 216 · GCF_000291135
AssemblyBaci_cere_ISP3191_V1 · Scaffoldhaploid
Genome composition5 371 123 bp · 35,0% GCBacillus cereus ISP3191
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key