1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:4.51e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGW_RS10345
Response regulator OmpR family
Bacillus cereus ISP3191 · GCF_000291135
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291135#IGW_RS10345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 215 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-210 aa · 72 aa · 33.5% of protein
Raw token
Trans_reg_C:139:8.17e-28:210:77:77- Raw architecture: Response_reg:3:4.51e-34:112:111:111#Trans_reg_C:139:8.17e-28:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291135::NZ_JH792131.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1943590-1945606Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGW_02034RefSeq proteinWP_000865975.1
Context group ID
GCF_000291135::NZ_JH792131.1::G00020Context members
IGW_RS10345IGW_RS10350
Partner locus tags
IGW_RS10345IGW_RS10350
Partner old locus tags
IGW_02034IGW_02035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000865975.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGW_RS10345Primary locus identifier stored in the genes table.
Old locus tagIGW_02034Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792131.1Sequence record reported by the local genomic context database.
Genomic interval1 943 590-1 944 237 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 943 590-1 945 606 ntGCF_000291135::NZ_JH792131.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291135::NZ_JH792131.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792131.1All displayed genes belong to this local TCS context.
Neighborhood span1 943 590-1 945 606 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 943 590 nt1 945 606 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGW_RS10345GCF_000291135#IGW_RS10345
RROmpRCurrent focus
1 943 590-1 944 237 nt · Forward (+)
IGW_RS10350GCF_000291135#IGW_RS10350
HKClassic
1 944 230-1 945 606 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000143605#BACI_RS14070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906703
Simplified PFAM architecture for RROC_1906703
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1906703
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000143605#BACI_RS14070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 216 · GCF_000291135
AssemblyBaci_cere_ISP3191_V1 · Scaffoldhaploid
Genome composition5 371 123 bp · 35,0% GCBacillus cereus ISP3191
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key