1 Response_reg#1
4-111 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:4:6.2e-33:111:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGW_RS05720
Response regulator OmpR family
Bacillus cereus ISP3191 · GCF_000291135
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291135#IGW_RS05720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 220 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:2.33e-23:218:77:77- Raw architecture: Response_reg:4:6.2e-33:111:112:111#Trans_reg_C:144:2.33e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291135::NZ_JH792131.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1052806-1054817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGW_01117RefSeq proteinWP_000101082.1
Context group ID
GCF_000291135::NZ_JH792131.1::G00012Context members
IGW_RS05720IGW_RS05725
Partner locus tags
IGW_RS05720IGW_RS05725
Partner old locus tags
IGW_01117IGW_01118
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000101082.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGW_RS05720Primary locus identifier stored in the genes table.
Old locus tagIGW_01117Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792131.1Sequence record reported by the local genomic context database.
Genomic interval1 052 806-1 053 468 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 052 806-1 054 817 ntGCF_000291135::NZ_JH792131.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291135::NZ_JH792131.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792131.1All displayed genes belong to this local TCS context.
Neighborhood span1 052 806-1 054 817 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 052 806 nt1 054 817 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGW_RS05720GCF_000291135#IGW_RS05720
RROmpRCurrent focus
1 052 806-1 053 468 nt · Forward (+)
IGW_RS05725GCF_000291135#IGW_RS05725
HKClassic
1 053 456-1 054 817 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291135#IGW_RS05720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723708
Simplified PFAM architecture for RROC_1723708
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1723708
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000291135#IGW_RS05720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 216 · GCF_000291135
AssemblyBaci_cere_ISP3191_V1 · Scaffoldhaploid
Genome composition5 371 123 bp · 35,0% GCBacillus cereus ISP3191
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key