1 Response_reg#1
3-115 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:3:2.2e-24:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGW_RS01990
Response regulator, unclassified
Bacillus cereus ISP3191 · GCF_000291135
ClassRRTypeunclassifiedLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291135#IGW_RS01990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 231 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
137-177 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:137:0.00000000107:177:41:423 HTH_AraC#3
189-228 aa · 40 aa · 17.3% of protein
Raw token
HTH_AraC:189:0.0000000226:228:42:42- Raw architecture: Response_reg:3:2.2e-24:115:113:111#HTH_AraC:137:0.00000000107:177:41:42#HTH_AraC:189:0.0000000226:228:42:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291135::NZ_JH792131.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span360705-362170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGW_00391RefSeq proteinWP_001101759.1
Context group ID
GCF_000291135::NZ_JH792131.1::G00008Context members
IGW_RS01990IGW_RS01995
Partner locus tags
IGW_RS01990IGW_RS01995
Partner old locus tags
IGW_00391IGW_00392
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001101759.1Primary protein accession used for annex mappings.
UniProt accessionQ6HD23Primary UniProt accession resolved in the annex database.
UniProt IDQ6HD23_BACHKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGW_RS01990Primary locus identifier stored in the genes table.
Old locus tagIGW_00391Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792131.1Sequence record reported by the local genomic context database.
Genomic interval360 705-361 400 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span360 705-362 170 ntGCF_000291135::NZ_JH792131.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291135::NZ_JH792131.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792131.1All displayed genes belong to this local TCS context.
Neighborhood span360 705-362 170 nt1 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
360 705 nt362 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGW_RS01990GCF_000291135#IGW_RS01990
RRunclassifiedCurrent focus
360 705-361 400 nt · Reverse (-)
IGW_RS01995GCF_000291135#IGW_RS01995
HKClassic
361 397-362 170 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS22170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1157736
Simplified PFAM architecture for RROC_1157736
PFAM domain coverage: 191 / 231 aa (82.7%)
1 aa231 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[150-228]
- Domain count: 2
- Matched identifier: RROC_1157736
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_18 150-228 ; HTH_18 150-228
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS22170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 216 · GCF_000291135
AssemblyBaci_cere_ISP3191_V1 · Scaffoldhaploid
Genome composition5 371 123 bp · 35,0% GCBacillus cereus ISP3191
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key