1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000134:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGK_RS09480
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291095
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291095#IGK_RS09480Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 490 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000049:323:66:643 HATPase_c#3
369-469 aa · 101 aa · 20.6% of protein
Raw token
HATPase_c:369:4.67e-17:469:101:109- Raw architecture: HAMP:164:0.00000000000000134:233:70:69#HisKA:258:0.0000000000049:323:66:64#HATPase_c:369:4.67e-17:469:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291095::NZ_JH792135.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1884721-1886851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGK_01899RefSeq proteinWP_001084880.1
Context group ID
GCF_000291095::NZ_JH792135.1::G00030Context members
IGK_RS09475IGK_RS09480
Partner locus tags
IGK_RS09475IGK_RS09480
Partner old locus tags
IGK_01898IGK_01899
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001084880.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGK_RS09480Primary locus identifier stored in the genes table.
Old locus tagIGK_01899Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792135.1Sequence record reported by the local genomic context database.
Genomic interval1 885 379-1 886 851 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 884 721-1 886 851 ntGCF_000291095::NZ_JH792135.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291095::NZ_JH792135.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792135.1All displayed genes belong to this local TCS context.
Neighborhood span1 884 721-1 886 851 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 884 721 nt1 886 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGK_RS09475GCF_000291095#IGK_RS09475
RROmpR
1 884 721-1 885 386 nt · Forward (+)
IGK_RS09480GCF_000291095#IGK_RS09480
HKClassicCurrent focus
1 885 379-1 886 851 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291095#IGK_RS09480The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533825
Simplified PFAM architecture for HKOC_1533825
PFAM domain coverage: 226 / 490 aa (46.1%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1533825
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000291095#IGK_RS09480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291095
AssemblyBaci_cere_HuB4-10_V1 · Scaffoldhaploid
Genome composition5 642 127 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 115 · HK 63 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key