1 HisKA_3#1
573-639 aa · 67 aa · 8.7% of protein
Raw token
HisKA_3:573:0.000000000804:639:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICE_RS21620
Histidine kinase, Classic
Bacillus cereus BAG1X1-2 · GCF_000291035
ClassHKTypeClassicLength772 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291035#ICE_RS21620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length772 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 772 aa (20.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa772 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
678-770 aa · 93 aa · 12.0% of protein
Raw token
HATPase_c:678:0.00000000000000881:770:106:109- Raw architecture: HisKA_3:573:0.000000000804:639:68:68#HATPase_c:678:0.00000000000000881:770:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291035::NZ_JH792223.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span215497-218460Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICE_04368RefSeq proteinWP_001166936.1
Context group ID
GCF_000291035::NZ_JH792223.1::G00048Context members
ICE_RS21620ICE_RS21625
Partner locus tags
ICE_RS21620ICE_RS21625
Partner old locus tags
ICE_04368ICE_04369
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001166936.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICE_RS21620Primary locus identifier stored in the genes table.
Old locus tagICE_04368Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792223.1Sequence record reported by the local genomic context database.
Genomic interval215 497-217 815 nt2 319 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span215 497-218 460 ntGCF_000291035::NZ_JH792223.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291035::NZ_JH792223.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792223.1All displayed genes belong to this local TCS context.
Neighborhood span215 497-218 460 nt2 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
215 497 nt218 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICE_RS21620GCF_000291035#ICE_RS21620
HKClassicCurrent focus
215 497-217 815 nt · Forward (+)
ICE_RS21625GCF_000291035#ICE_RS21625
RRNarL
217 819-218 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS21620The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0613892
Simplified PFAM architecture for HKOC_0613892
PFAM domain coverage: 156 / 772 aa (20.2%)
1 aa772 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[573-638] | HATPase_c[681-770]
- Domain count: 2
- Matched identifier: HKOC_0613892
- Positioned domains: HisKA_3 573-638 ; HATPase_c 681-770
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS21620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 171 · GCF_000291035
AssemblyBaci_cere_BAG1X1-2_G13151_V1 · Scaffoldhaploid
Genome composition5 856 198 bp · 35,0% GCBacillus cereus BAG1X1-2
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key