1 HAMP#1
310-377 aa · 68 aa · 11.0% of protein
Raw token
HAMP:310:0.000000000000304:377:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICE_RS20180
Histidine kinase, Classic
Bacillus cereus BAG1X1-2 · GCF_000291035
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291035#ICE_RS20180Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 616 aa (39.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.6% of protein
Raw token
HisKA:397:0.0000000000000179:461:65:643 HATPase_c#3
505-615 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:505:6.03e-21:615:112:109- Raw architecture: HAMP:310:0.000000000000304:377:68:69#HisKA:397:0.0000000000000179:461:65:64#HATPase_c:505:6.03e-21:615:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291035::NZ_JH792222.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4005488-4008024Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICE_04089RefSeq proteinWP_001225359.1
Context group ID
GCF_000291035::NZ_JH792222.1::G00043Context members
ICE_RS20180ICE_RS20185
Partner locus tags
ICE_RS20180ICE_RS20185
Partner old locus tags
ICE_04089ICE_04090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001225359.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5XMC4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5XMC4_BACCEDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICE_RS20180Primary locus identifier stored in the genes table.
Old locus tagICE_04089Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792222.1Sequence record reported by the local genomic context database.
Genomic interval4 005 488-4 007 338 nt1 851 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 005 488-4 008 024 ntGCF_000291035::NZ_JH792222.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291035::NZ_JH792222.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792222.1All displayed genes belong to this local TCS context.
Neighborhood span4 005 488-4 008 024 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 005 488 nt4 008 024 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICE_RS20180GCF_000291035#ICE_RS20180
HKClassicCurrent focus
4 005 488-4 007 338 nt · Reverse (-)
ICE_RS20185GCF_000291035#ICE_RS20185
RROmpR
4 007 335-4 008 024 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS20180The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0985257
Simplified PFAM architecture for HKOC_0985257
PFAM domain coverage: 224 / 616 aa (36.4%)
1 aa616 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[328-377] | HisKA[397-461] | HATPase_c[507-615]
- Domain count: 3
- Matched identifier: HKOC_0985257
- Positioned domains: HAMP 328-377 ; HisKA 397-461 ; HATPase_c 507-615
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS20180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 171 · GCF_000291035
AssemblyBaci_cere_BAG1X1-2_G13151_V1 · Scaffoldhaploid
Genome composition5 856 198 bp · 35,0% GCBacillus cereus BAG1X1-2
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key