1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:5.49e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC9_RS25400
Response regulator OmpR family
Bacillus toyonensis · GCF_000291015
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291015#IC9_RS25400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:3.15e-37:229:77:77- Raw architecture: Response_reg:6:5.49e-36:115:111:111#Trans_reg_C:153:3.15e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291015::NZ_JH792322.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span236157-238347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC9_05057RefSeq proteinWP_000896762.1
Context group ID
GCF_000291015::NZ_JH792322.1::G00064Context members
IC9_RS25395IC9_RS25400
Partner locus tags
IC9_RS25395IC9_RS25400
Partner old locus tags
IC9_05056IC9_05057
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000896762.1Primary protein accession used for annex mappings.
UniProt accessionA0A2C4CZD4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2C4CZD4_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC9_RS25400Primary locus identifier stored in the genes table.
Old locus tagIC9_05057Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792322.1Sequence record reported by the local genomic context database.
Genomic interval237 646-238 347 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span236 157-238 347 ntGCF_000291015::NZ_JH792322.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291015::NZ_JH792322.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792322.1All displayed genes belong to this local TCS context.
Neighborhood span236 157-238 347 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
236 157 nt238 347 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC9_RS25395GCF_000291015#IC9_RS25395
HKClassic
236 157-237 662 nt · Reverse (-)
IC9_RS25400GCF_000291015#IC9_RS25400
RROmpRCurrent focus
237 646-238 347 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291015#IC9_RS25400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081719
Simplified PFAM architecture for RROC_1081719
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1081719
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000291015#IC9_RS25400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291015
AssemblyBaci_cere_BAG1O-2_G13159_V1 · Scaffoldhaploid
Genome composition5 585 341 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key