1 HAMP#1
318-385 aa · 68 aa · 10.9% of protein
Raw token
HAMP:318:0.000000000000109:385:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC9_RS03610
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291015
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291015#IC9_RS03610Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 624 aa (38.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation3 items
2 HisKA#2
405-469 aa · 65 aa · 10.4% of protein
Raw token
HisKA:405:0.00000000000000672:469:65:643 HATPase_c#3
513-620 aa · 108 aa · 17.3% of protein
Raw token
HATPase_c:513:9.75e-21:620:109:109- Raw architecture: HAMP:318:0.000000000000109:385:68:69#HisKA:405:0.00000000000000672:469:65:64#HATPase_c:513:9.75e-21:620:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291015::NZ_JH792321.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span698516-701076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC9_00690RefSeq proteinWP_001225352.1
Context group ID
GCF_000291015::NZ_JH792321.1::G00012Context members
IC9_RS03605IC9_RS03610
Partner locus tags
IC9_RS03605IC9_RS03610
Partner old locus tags
IC9_00689IC9_00690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001225352.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36SQH9Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36SQH9_9BACIDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC9_RS03610Primary locus identifier stored in the genes table.
Old locus tagIC9_00690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792321.1Sequence record reported by the local genomic context database.
Genomic interval699 202-701 076 nt1 875 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span698 516-701 076 ntGCF_000291015::NZ_JH792321.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291015::NZ_JH792321.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792321.1All displayed genes belong to this local TCS context.
Neighborhood span698 516-701 076 nt2 561 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
698 516 nt701 076 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC9_RS03605GCF_000291015#IC9_RS03605
RROmpR
698 516-699 205 nt · Forward (+)
IC9_RS03610GCF_000291015#IC9_RS03610
HKClassicCurrent focus
699 202-701 076 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291015#IC9_RS03610The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0961576
Simplified PFAM architecture for HKOC_0961576
PFAM domain coverage: 221 / 624 aa (35.4%)
1 aa624 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[336-385] | HisKA[405-469] | HATPase_c[515-620]
- Domain count: 3
- Matched identifier: HKOC_0961576
- Positioned domains: HAMP 336-385 ; HisKA 405-469 ; HATPase_c 515-620
Cluster members and taxonomy
Representative gene: GCF_000291015#IC9_RS03610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291015
AssemblyBaci_cere_BAG1O-2_G13159_V1 · Scaffoldhaploid
Genome composition5 585 341 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key