1 HisKA_3#1
185-244 aa · 60 aa · 15.6% of protein
Raw token
HisKA_3:185:7.37e-20:244:60:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS09240
Histidine kinase, Classic
Bacillus cereus VD142 · GCF_000290975
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290975#IC3_RS09240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 385 aa (38.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-380 aa · 88 aa · 22.9% of protein
Raw token
HATPase_c:293:0.00000000000498:380:104:109- Raw architecture: HisKA_3:185:7.37e-20:244:60:68#HATPase_c:293:0.00000000000498:380:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290975::NZ_KE150045.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146557-148379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_02499RefSeq proteinWP_002087572.1
Context group ID
GCF_000290975::NZ_KE150045.1::G00025Context members
IC3_RS09235IC3_RS09240
Partner locus tags
IC3_RS09235IC3_RS09240
Partner old locus tags
IC3_02498IC3_02499
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002087572.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS09240Primary locus identifier stored in the genes table.
Old locus tagIC3_02499Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150045.1Sequence record reported by the local genomic context database.
Genomic interval147 222-148 379 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span146 557-148 379 ntGCF_000290975::NZ_KE150045.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150045.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150045.1All displayed genes belong to this local TCS context.
Neighborhood span146 557-148 379 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 557 nt148 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC3_RS09235GCF_000290975#IC3_RS09235
RRNarL
146 557-147 225 nt · Reverse (-)
IC3_RS09240GCF_000290975#IC3_RS09240
HKClassicCurrent focus
147 222-148 379 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS09240The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565158
Simplified PFAM architecture for HKOC_2565158
PFAM domain coverage: 151 / 385 aa (39.2%)
1 aa385 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[185-246] | HATPase_c[291-379]
- Domain count: 2
- Matched identifier: HKOC_2565158
- Positioned domains: HisKA_3 185-246 ; HATPase_c 291-379
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS09240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key