1 Response_reg#1
4-116 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:4:9.73e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIG_RS00740
Response regulator NarL family
Bacillus cereus VD048 · GCF_000290915
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290915#IIG_RS00740Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 212 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:149:2.11e-24:203:55:58- Raw architecture: Response_reg:4:9.73e-34:116:113:111#HTH_LUXR:149:2.11e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290915::NZ_JH792310.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122247-124719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIG_00123RefSeq proteinWP_000619336.1
Context group ID
GCF_000290915::NZ_JH792310.1::G00006Context members
IIG_RS00735IIG_RS00740
Partner locus tags
IIG_RS00735IIG_RS00740
Partner old locus tags
IIG_00122IIG_00123
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000619336.1Primary protein accession used for annex mappings.
UniProt accessionJ8IN52Primary UniProt accession resolved in the annex database.
UniProt IDJ8IN52_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIG_RS00740Primary locus identifier stored in the genes table.
Old locus tagIIG_00123Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792310.1Sequence record reported by the local genomic context database.
Genomic interval124 081-124 719 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 247-124 719 ntGCF_000290915::NZ_JH792310.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290915::NZ_JH792310.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792310.1All displayed genes belong to this local TCS context.
Neighborhood span122 247-124 719 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 247 nt124 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIG_RS00735GCF_000290915#IIG_RS00735
HKClassic
122 247-124 106 nt · Forward (+)
IIG_RS00740GCF_000290915#IIG_RS00740
RRNarLCurrent focus
124 081-124 719 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290915#IIG_RS00740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1986445
Simplified PFAM architecture for RROC_1986445
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1986445
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000290915#IIG_RS00740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 226 · GCF_000290915
AssemblyBaci_cere_VD048_V1 · Scaffoldhaploid
Genome composition6 038 572 bp · 35,0% GCBacillus cereus VD048
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key