1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.0000000000000452:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIG_RS00460
Histidine kinase, Classic
Bacillus cereus VD048 · GCF_000290915
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290915#IIG_RS00460Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 617 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.0000000000000655:462:65:643 HATPase_c#3
506-616 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:506:1.8e-22:616:112:109- Raw architecture: HAMP:311:0.0000000000000452:378:68:69#HisKA:398:0.0000000000000655:462:65:64#HATPase_c:506:1.8e-22:616:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290915::NZ_JH792310.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76231-78770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIG_00070RefSeq proteinWP_002164899.1
Context group ID
GCF_000290915::NZ_JH792310.1::G00004Context members
IIG_RS00455IIG_RS00460
Partner locus tags
IIG_RS00455IIG_RS00460
Partner old locus tags
IIG_00069IIG_00070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002164899.1Primary protein accession used for annex mappings.
UniProt accessionJ8I3N7Primary UniProt accession resolved in the annex database.
UniProt IDJ8I3N7_BACCEDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIG_RS00460Primary locus identifier stored in the genes table.
Old locus tagIIG_00070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792310.1Sequence record reported by the local genomic context database.
Genomic interval76 917-78 770 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 231-78 770 ntGCF_000290915::NZ_JH792310.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290915::NZ_JH792310.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792310.1All displayed genes belong to this local TCS context.
Neighborhood span76 231-78 770 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 231 nt78 770 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIG_RS00455GCF_000290915#IIG_RS00455
RROmpR
76 231-76 920 nt · Forward (+)
IIG_RS00460GCF_000290915#IIG_RS00460
HKClassicCurrent focus
76 917-78 770 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290915#IIG_RS00460The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982027
Simplified PFAM architecture for HKOC_0982027
PFAM domain coverage: 226 / 617 aa (36.6%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[506-616]
- Domain count: 3
- Matched identifier: HKOC_0982027
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 506-616
Cluster members and taxonomy
Representative gene: GCF_000290915#IIG_RS00460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 226 · GCF_000290915
AssemblyBaci_cere_VD048_V1 · Scaffoldhaploid
Genome composition6 038 572 bp · 35,0% GCBacillus cereus VD048
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key