1 Hpt#1
4-96 aa · 93 aa · 14.1% of protein
Raw token
Hpt:4:7.99e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK3_RS19315
Histidine kinase, CheA
Bacillus toyonensis · GCF_000290815
ClassHKTypeCheALength661 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290815#IK3_RS19315Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 661 aa (64.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
278-337 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:278:0.00000000765:337:67:673 HATPase_c#3
385-524 aa · 140 aa · 21.2% of protein
Raw token
HATPase_c:385:2.07e-17:524:140:1094 CheW#4
529-661 aa · 133 aa · 20.1% of protein
Raw token
CheW:529:1.35e-21:661:139:138- Raw architecture: Hpt:4:7.99e-17:96:93:84#H-kinase_dim:278:0.00000000765:337:67:67#HATPase_c:385:2.07e-17:524:140:109#CheW:529:1.35e-21:661:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290815::NZ_JH792156.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3847597-3850080Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK3_03890RefSeq proteinWP_001192580.1
Context group ID
GCF_000290815::NZ_JH792156.1::G00045Context members
IK3_RS19315IK3_RS19320
Partner locus tags
IK3_RS19315IK3_RS19320
Partner old locus tags
IK3_03890IK3_03891
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001192580.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36SKD9Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36SKD9_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK3_RS19315Primary locus identifier stored in the genes table.
Old locus tagIK3_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792156.1Sequence record reported by the local genomic context database.
Genomic interval3 847 597-3 849 582 nt1 986 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 847 597-3 850 080 ntGCF_000290815::NZ_JH792156.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290815::NZ_JH792156.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792156.1All displayed genes belong to this local TCS context.
Neighborhood span3 847 597-3 850 080 nt2 484 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 847 597 nt3 850 080 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK3_RS19315GCF_000290815#IK3_RS19315
HKCheACurrent focus
3 847 597-3 849 582 nt · Reverse (-)
IK3_RS19320GCF_000290815#IK3_RS19320
RRCheY
3 849 712-3 850 080 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS19315The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0869863
Simplified PFAM architecture for HKOC_0869863
PFAM domain coverage: 509 / 661 aa (77.0%)
1 aa661 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[278-336] | HATPase_c[385-524] | CheW[530-661]
- Domain count: 5
- Matched identifier: HKOC_0869863
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 278-336 ; HATPase_c 385-524 ; CheW 530-661
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS19315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000290815
AssemblyBaci_cere_VD148_V1 · Scaffoldhaploid
Genome composition5 742 916 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key