1 Response_reg#1
4-114 aa · 111 aa · 45.1% of protein
Raw token
Response_reg:4:9.31e-28:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK3_RS00630
Response regulator LytTR family
Bacillus toyonensis · GCF_000290815
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290815#IK3_RS00630Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 246 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-244 aa · 97 aa · 39.4% of protein
Raw token
LytTR:148:2.58e-38:244:97:98- Raw architecture: Response_reg:4:9.31e-28:114:113:111#LytTR:148:2.58e-38:244:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290815::NZ_JH792156.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125804-128291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK3_00119RefSeq proteinWP_000921837.1
Context group ID
GCF_000290815::NZ_JH792156.1::G00002Context members
IK3_RS00625IK3_RS00630
Partner locus tags
IK3_RS00625IK3_RS00630
Partner old locus tags
IK3_00118IK3_00119
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000921837.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V6LGR6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V6LGR6_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK3_RS00630Primary locus identifier stored in the genes table.
Old locus tagIK3_00119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792156.1Sequence record reported by the local genomic context database.
Genomic interval127 551-128 291 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 804-128 291 ntGCF_000290815::NZ_JH792156.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290815::NZ_JH792156.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792156.1All displayed genes belong to this local TCS context.
Neighborhood span125 804-128 291 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 804 nt128 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK3_RS00625GCF_000290815#IK3_RS00625
HKClassic
125 804-127 573 nt · Forward (+)
IK3_RS00630GCF_000290815#IK3_RS00630
RRLytTRCurrent focus
127 551-128 291 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS00630The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769835
Simplified PFAM architecture for RROC_0769835
PFAM domain coverage: 206 / 246 aa (83.7%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[149-244]
- Domain count: 2
- Matched identifier: RROC_0769835
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 149-244 ; LytTR 149-244
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS00630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000290815
AssemblyBaci_cere_VD148_V1 · Scaffoldhaploid
Genome composition5 742 916 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key