1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.00000000000415:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK5_RS07265
Histidine kinase, Classic
Bacillus cereus VD154 · GCF_000290795
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290795#IK5_RS07265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 417 aa (40.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
313-416 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:313:3.09e-22:416:107:109- Raw architecture: HisKA:208:0.00000000000415:271:64:64#HATPase_c:313:3.09e-22:416:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290795::NZ_JH791880.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1467067-1468320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK5_01458RefSeq proteinWP_000513034.1
Context group ID
GCF_000290795::NZ_JH791880.1::G00013Context members
IK5_RS07265
Partner locus tags
IK5_RS07265
Partner old locus tags
IK5_01458
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000513034.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6QLI1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6QLI1_BACTUDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK5_RS07265Primary locus identifier stored in the genes table.
Old locus tagIK5_01458Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791880.1Sequence record reported by the local genomic context database.
Genomic interval1 467 067-1 468 320 nt1 254 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 467 067-1 468 320 ntGCF_000290795::NZ_JH791880.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290795::NZ_JH791880.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791880.1All displayed genes belong to this local TCS context.
Neighborhood span1 467 067-1 468 320 nt1 254 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 467 067 nt1 468 320 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IK5_RS07265GCF_000290795#IK5_RS07265
HKClassicCurrent focus
1 467 067-1 468 320 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161175#BCERE0018_RS16375Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2293488
Simplified PFAM architecture for HKOC_2293488
PFAM domain coverage: 168 / 417 aa (40.3%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-271] | HATPase_c[313-416]
- Domain count: 2
- Matched identifier: HKOC_2293488
- Positioned domains: HisKA 208-271 ; HATPase_c 313-416
Cluster members and taxonomy
Representative gene: GCF_000161175#BCERE0018_RS16375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 238 · GCF_000290795
AssemblyBaci_cere_VD154_V1 · Scaffoldhaploid
Genome composition6 305 592 bp · 35,0% GCBacillus cereus VD154
Signal transduction countsGenes 110 · HK 59 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key