1 HisKA#1
124-170 aa · 47 aa · 14.5% of protein
Raw token
HisKA:124:0.00000803:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK5_RS02400
Histidine kinase, Classic
Bacillus cereus VD154 · GCF_000290795
ClassHKTypeClassicLength324 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290795#IK5_RS02400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length324 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 324 aa (47.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa324 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-324 aa · 108 aa · 33.3% of protein
Raw token
HATPase_c:217:1.08e-27:324:108:109- Raw architecture: HisKA:124:0.00000803:170:53:64#HATPase_c:217:1.08e-27:324:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290795::NZ_JH791880.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span505629-507307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK5_00479RefSeq proteinWP_002178119.1
Context group ID
GCF_000290795::NZ_JH791880.1::G00005Context members
IK5_RS02395IK5_RS02400
Partner locus tags
IK5_RS02395IK5_RS02400
Partner old locus tags
IK5_00478IK5_00479
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002178119.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X0JY05Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X0JY05_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK5_RS02400Primary locus identifier stored in the genes table.
Old locus tagIK5_00479Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791880.1Sequence record reported by the local genomic context database.
Genomic interval506 333-507 307 nt975 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span505 629-507 307 ntGCF_000290795::NZ_JH791880.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290795::NZ_JH791880.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791880.1All displayed genes belong to this local TCS context.
Neighborhood span505 629-507 307 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
505 629 nt507 307 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK5_RS02395GCF_000290795#IK5_RS02395
RROmpR
505 629-506 336 nt · Forward (+)
IK5_RS02400GCF_000290795#IK5_RS02400
HKClassicCurrent focus
506 333-507 307 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161555#BTHUR0005_RS12065Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2865119
Simplified PFAM architecture for HKOC_2865119
PFAM domain coverage: 107 / 324 aa (33.0%)
1 aa324 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-323]
- Domain count: 1
- Matched identifier: HKOC_2865119
- Positioned domains: HATPase_c 217-323
Cluster members and taxonomy
Representative gene: GCF_000161555#BTHUR0005_RS12065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 238 · GCF_000290795
AssemblyBaci_cere_VD154_V1 · Scaffoldhaploid
Genome composition6 305 592 bp · 35,0% GCBacillus cereus VD154
Signal transduction countsGenes 110 · HK 59 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key