1 HisKA#1
124-170 aa · 47 aa · 14.4% of protein
Raw token
HisKA:124:0.00000821:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS13930
Histidine kinase, Classic
Bacillus mycoides · GCF_000290695
ClassHKTypeClassicLength327 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290695#IKM_RS13930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length327 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 327 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
217-324 aa · 108 aa · 33.0% of protein
Raw token
HATPase_c:217:7.99e-27:324:108:109- Raw architecture: HisKA:124:0.00000821:170:53:64#HATPase_c:217:7.99e-27:324:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290695::NZ_JH791837.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2710239-2711926Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_02814RefSeq proteinWP_002127680.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00034Context members
IKM_RS13925IKM_RS13930
Partner locus tags
IKM_RS13925IKM_RS13930
Partner old locus tags
IKM_02813IKM_02814
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002127680.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5S1S7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5S1S7_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS13930Primary locus identifier stored in the genes table.
Old locus tagIKM_02814Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval2 710 943-2 711 926 nt984 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 710 239-2 711 926 ntGCF_000290695::NZ_JH791837.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span2 710 239-2 711 926 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 710 239 nt2 711 926 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKM_RS13925GCF_000290695#IKM_RS13925
RROmpR
2 710 239-2 710 946 nt · Forward (+)
IKM_RS13930GCF_000290695#IKM_RS13930
HKClassicCurrent focus
2 710 943-2 711 926 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS13930The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2861311
Simplified PFAM architecture for HKOC_2861311
PFAM domain coverage: 107 / 327 aa (32.7%)
1 aa327 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-323]
- Domain count: 1
- Matched identifier: HKOC_2861311
- Positioned domains: HATPase_c 217-323
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS13930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key