1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:7.77e-17:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS04470
Histidine kinase, Classic
Bacillus mycoides · GCF_000290695
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290695#IKM_RS04470Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:3.37e-16:319:65:643 HATPase_c#3
367-480 aa · 114 aa · 23.6% of protein
Raw token
HATPase_c:367:1.95e-29:480:114:109- Raw architecture: HAMP:174:7.77e-17:243:70:69#HisKA:255:3.37e-16:319:65:64#HATPase_c:367:1.95e-29:480:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290695::NZ_JH791837.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span873360-875505Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_00882RefSeq proteinWP_002129434.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00014Context members
IKM_RS04470IKM_RS04475
Partner locus tags
IKM_RS04470IKM_RS04475
Partner old locus tags
IKM_00882IKM_00883
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002129434.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TBH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TBH4_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS04470Primary locus identifier stored in the genes table.
Old locus tagIKM_00882Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval873 360-874 814 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span873 360-875 505 ntGCF_000290695::NZ_JH791837.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span873 360-875 505 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
873 360 nt875 505 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKM_RS04470GCF_000290695#IKM_RS04470
HKClassicCurrent focus
873 360-874 814 nt · Forward (+)
IKM_RS04475GCF_000290695#IKM_RS04475
RROmpR
874 816-875 505 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS04470The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584282
Simplified PFAM architecture for HKOC_1584282
PFAM domain coverage: 227 / 484 aa (46.9%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-243] | HisKA[255-319] | HATPase_c[370-478]
- Domain count: 3
- Matched identifier: HKOC_1584282
- Positioned domains: HAMP 191-243 ; HisKA 255-319 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key