1 HAMP#1
184-250 aa · 67 aa · 14.2% of protein
Raw token
HAMP:184:0.00000000161:250:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A267_RS0101685
Histidine kinase, Classic
Yersinia pestis 2501 · GCF_000275685
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000275685#A267_RS0101685Stable P2CS identifier used across views.
GenomeGCF_000275685Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 472 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
257-319 aa · 63 aa · 13.3% of protein
Raw token
HisKA:257:0.00000000000174:319:63:643 HATPase_c#3
364-472 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:364:1.08e-25:472:109:109- Raw architecture: HAMP:184:0.00000000161:250:67:69#HisKA:257:0.00000000000174:319:63:64#HATPase_c:364:1.08e-25:472:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000275685::NZ_AKVQ01000004.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31157-33298Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000275685::NZ_AKVQ01000004.1::G00002Context members
A267_RS0101680A267_RS0101685
Partner locus tags
A267_RS0101680A267_RS0101685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002209936.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YM27Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YM27_YERPNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA267_RS0101685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKVQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval31 880-33 298 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 157-33 298 ntGCF_000275685::NZ_AKVQ01000004.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000275685::NZ_AKVQ01000004.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKVQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span31 157-33 298 nt2 142 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 157 nt33 298 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A267_RS0101680GCF_000275685#A267_RS0101680
RROmpR
31 157-31 855 nt · Forward (+)
A267_RS0101685GCF_000275685#A267_RS0101685
HKClassicCurrent focus
31 880-33 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS16870Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1696494
Simplified PFAM architecture for HKOC_1696494
PFAM domain coverage: 171 / 472 aa (36.2%)
1 aa472 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[258-319] | HATPase_c[364-472]
- Domain count: 2
- Matched identifier: HKOC_1696494
- Positioned domains: HisKA 258-319 ; HATPase_c 364-472
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS16870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 194 970 · GCF_000275685
AssemblyASM27568v1 · Scaffoldhaploid
Genome composition4 597 322 bp · 47,5% GCYersinia pestis 2501
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key