1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:2.35e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SGPB_RS03785
Response regulator OmpR family
Streptococcus pasteurianus ATCC 43144 · GCF_000270165
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000270165#SGPB_RS03785Stable P2CS identifier used across views.
GenomeGCF_000270165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:154:4.4e-26:229:76:77- Raw architecture: Response_reg:6:2.35e-39:115:111:111#Trans_reg_C:154:4.4e-26:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000270165::NC_015600.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span738665-742058Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSGPB_0704RefSeq proteinWP_013851676.1
Context group ID
GCF_000270165::NC_015600.1::G00005Context members
SGPB_RS03780SGPB_RS03785
Partner locus tags
SGPB_RS03780SGPB_RS03785
Partner old locus tags
SGPB_0703SGPB_0704
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013851676.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YIS0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YIS0_STRMCDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSGPB_RS03785Primary locus identifier stored in the genes table.
Old locus tagSGPB_0704Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_015600.1Sequence record reported by the local genomic context database.
Genomic interval741 357-742 058 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span738 665-742 058 ntGCF_000270165::NC_015600.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000270165::NC_015600.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_015600.1All displayed genes belong to this local TCS context.
Neighborhood span738 665-742 058 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
738 665 nt742 058 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SGPB_RS03780GCF_000270165#SGPB_RS03780
HKClassic
738 665-741 364 nt · Forward (+)
SGPB_RS03785GCF_000270165#SGPB_RS03785
RROmpRCurrent focus
741 357-742 058 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000270165#SGPB_RS03785The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081571
Simplified PFAM architecture for RROC_1081571
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1081571
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000270165#SGPB_RS03785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 981 540 · GCF_000270165
AssemblyASM27016v1 · Complete Genomehaploid
Genome composition2 100 077 bp · 37,5% GCStreptococcus pasteurianus ATCC 43144
Signal transduction countsGenes 25 · HK 12 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key