1 HisKA_3#1
132-200 aa · 69 aa · 20.2% of protein
Raw token
HisKA_3:132:1.77e-18:200:69:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SGPB_RS02225
Histidine kinase, Classic
Streptococcus pasteurianus ATCC 43144 · GCF_000270165
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000270165#SGPB_RS02225Stable P2CS identifier used across views.
GenomeGCF_000270165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 341 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa341 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-327 aa · 90 aa · 26.4% of protein
Raw token
HATPase_c:238:0.00000000000285:327:105:109- Raw architecture: HisKA_3:132:1.77e-18:200:69:68#HATPase_c:238:0.00000000000285:327:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000270165::NC_015600.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span417728-419381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSGPB_0397RefSeq proteinWP_013851526.1
Context group ID
GCF_000270165::NC_015600.1::G00002Context members
SGPB_RS02225SGPB_RS02230
Partner locus tags
SGPB_RS02225SGPB_RS02230
Partner old locus tags
SGPB_0397SGPB_0398
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013851526.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YET2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YET2_STRMCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSGPB_RS02225Primary locus identifier stored in the genes table.
Old locus tagSGPB_0397Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_015600.1Sequence record reported by the local genomic context database.
Genomic interval417 728-418 753 nt1 026 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span417 728-419 381 ntGCF_000270165::NC_015600.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000270165::NC_015600.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_015600.1All displayed genes belong to this local TCS context.
Neighborhood span417 728-419 381 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
417 728 nt419 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SGPB_RS02225GCF_000270165#SGPB_RS02225
HKClassicCurrent focus
417 728-418 753 nt · Forward (+)
SGPB_RS02230GCF_000270165#SGPB_RS02230
RRNarL
418 737-419 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000270165#SGPB_RS02225The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2833979
Simplified PFAM architecture for HKOC_2833979
PFAM domain coverage: 159 / 341 aa (46.6%)
1 aa341 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[132-200] | HATPase_c[238-327]
- Domain count: 2
- Matched identifier: HKOC_2833979
- Positioned domains: HisKA_3 132-200 ; HATPase_c 238-327
Cluster members and taxonomy
Representative gene: GCF_000270165#SGPB_RS02225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 981 540 · GCF_000270165
AssemblyASM27016v1 · Complete Genomehaploid
Genome composition2 100 077 bp · 37,5% GCStreptococcus pasteurianus ATCC 43144
Signal transduction countsGenes 25 · HK 12 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key