1 Response_reg#1
34-111 aa · 78 aa · 33.1% of protein
Raw token
Response_reg:34:0.000000000000142:111:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0116805
Response regulator LytTR family
Coprobacillus cateniformis · GCF_000269565
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000269565#HMPREF0273_RS0116805Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 236 aa (72.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 39.4% of protein
Raw token
LytTR:137:0.0000000000000015:229:100:98- Raw architecture: Response_reg:34:0.000000000000142:111:80:111#LytTR:137:0.0000000000000015:229:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000269565::NZ_AKCB01000003.1::G00036
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span72281-73734Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000003.1::G00036Context members
HMPREF0273_RS0116800HMPREF0273_RS0116805
Partner locus tags
HMPREF0273_RS0116800HMPREF0273_RS0116805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788559.1Primary protein accession used for annex mappings.
UniProt accessionE7G9K5Primary UniProt accession resolved in the annex database.
UniProt IDE7G9K5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0116805Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000003.1Sequence record reported by the local genomic context database.
Genomic interval73 024-73 734 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 281-73 734 ntGCF_000269565::NZ_AKCB01000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span72 281-73 734 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 281 nt73 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0273_RS0116800GCF_000269565#HMPREF0273_RS0116800
RRunclassified
72 281-73 003 nt · Forward (+)
HMPREF0273_RS0116805GCF_000269565#HMPREF0273_RS0116805
RRLytTRCurrent focus
73 024-73 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS07245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988703
Simplified PFAM architecture for RROC_0988703
PFAM domain coverage: 187 / 236 aa (79.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-113] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0988703
- Positioned domains: Response_reg 16-113 ; Response_reg 16-113 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS07245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key