1 Response_reg#1
6-114 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:6:5.76e-25:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0103920
Response regulator OmpR family
Coprobacillus cateniformis · GCF_000269565
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000269565#HMPREF0273_RS0103920Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.6% of protein
Raw token
Trans_reg_C:146:2.44e-31:221:77:77- Raw architecture: Response_reg:6:5.76e-25:114:110:111#Trans_reg_C:146:2.44e-31:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000269565::NZ_AKCB01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span743321-745275Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00006Context members
HMPREF0273_RS0103920HMPREF0273_RS0103925
Partner locus tags
HMPREF0273_RS0103920HMPREF0273_RS0103925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790521.1Primary protein accession used for annex mappings.
UniProt accessionE7GF96Primary UniProt accession resolved in the annex database.
UniProt IDE7GF96_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0103920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval743 321-744 001 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span743 321-745 275 ntGCF_000269565::NZ_AKCB01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span743 321-745 275 nt1 955 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
743 321 nt745 275 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0273_RS0103920GCF_000269565#HMPREF0273_RS0103920
RROmpRCurrent focus
743 321-744 001 nt · Forward (+)
HMPREF0273_RS0103925GCF_000269565#HMPREF0273_RS0103925
HKClassic
743 998-745 275 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS17350Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408804
Simplified PFAM architecture for RROC_1408804
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1408804
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS17350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key