1 Response_reg#1
58-118 aa · 61 aa · 24.3% of protein
Raw token
Response_reg:58:0.000000000142:118:63:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0116410
Response regulator LytTR family
Coprobacillus cateniformis · GCF_000269565
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000269565#HMPREF0273_RS0116410Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 251 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-242 aa · 89 aa · 35.5% of protein
Raw token
LytTR:154:0.0000000000874:242:94:98- Raw architecture: Response_reg:58:0.000000000142:118:63:111#LytTR:154:0.0000000000874:242:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000269565::NZ_AKCB01000002.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span436976-437737Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000002.1::G00034Context members
HMPREF0273_RS0116410
Partner locus tags
HMPREF0273_RS0116410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373115975.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0116410Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000002.1Sequence record reported by the local genomic context database.
Genomic interval436 976-437 737 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span436 976-437 737 ntGCF_000269565::NZ_AKCB01000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span436 976-437 737 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
436 976 nt437 737 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0273_RS0116410GCF_000269565#HMPREF0273_RS0116410
RRLytTRCurrent focus
436 976-437 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS06870Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0711788
Simplified PFAM architecture for RROC_0711788
PFAM domain coverage: 188 / 251 aa (74.9%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[18-117] | LytTR[154-241]
- Domain count: 2
- Matched identifier: RROC_0711788
- Positioned domains: Response_reg 18-117 ; Response_reg 18-117 ; LytTR 154-241 ; LytTR 154-241
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS06870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key