1 Response_reg#1
3-110 aa · 108 aa · 46.4% of protein
Raw token
Response_reg:3:0.0000000000422:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0114875
Response regulator LytTR family
Coprobacillus cateniformis · GCF_000269565
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000269565#HMPREF0273_RS0114875Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 233 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-225 aa · 84 aa · 36.1% of protein
Raw token
LytTR:142:0.00000000000199:225:89:98- Raw architecture: Response_reg:3:0.0000000000422:110:112:111#LytTR:142:0.00000000000199:225:89:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000269565::NZ_AKCB01000002.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span145474-146175Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000002.1::G00030Context members
HMPREF0273_RS0114875
Partner locus tags
HMPREF0273_RS0114875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788180.1Primary protein accession used for annex mappings.
UniProt accessionE7G8H6Primary UniProt accession resolved in the annex database.
UniProt IDE7G8H6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0114875Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000002.1Sequence record reported by the local genomic context database.
Genomic interval145 474-146 175 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span145 474-146 175 ntGCF_000269565::NZ_AKCB01000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span145 474-146 175 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 474 nt146 175 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0273_RS0114875GCF_000269565#HMPREF0273_RS0114875
RRLytTRCurrent focus
145 474-146 175 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS05345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081076
Simplified PFAM architecture for RROC_1081076
PFAM domain coverage: 198 / 233 aa (85.0%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[137-225]
- Domain count: 2
- Matched identifier: RROC_1081076
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; LytTR 137-225 ; LytTR 137-225
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS05345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key