1 Response_reg#1
7-111 aa · 105 aa · 15.7% of protein
Raw token
Response_reg:7:9.29e-22:111:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0111770
Response regulator, RpfG family
Coprobacillus cateniformis · GCF_000269565
ClassRRTypeRpfGLength669 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000269565#HMPREF0273_RS0111770Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length669 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage349 / 669 aa (52.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa669 aa
Domain-by-domain annotation3 items
2 HD#2
206-300 aa · 95 aa · 14.2% of protein
Raw token
HD:206:0.00000000000276:300:95:1103 GGDEF#3
515-663 aa · 149 aa · 22.3% of protein
Raw token
GGDEF:515:2.6e-40:663:160:160- Raw architecture: Response_reg:7:9.29e-22:111:106:111#HD:206:0.00000000000276:300:95:110#GGDEF:515:2.6e-40:663:160:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000269565::NZ_AKCB01000001.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2335560-2340709Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00027Context members
HMPREF0273_RS0111760HMPREF0273_RS0111770
Partner locus tags
HMPREF0273_RS0111760HMPREF0273_RS0111770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236916397.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0111770Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 338 700-2 340 709 nt2 010 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 335 560-2 340 709 ntGCF_000269565::NZ_AKCB01000001.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 335 560-2 340 709 nt5 150 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 335 560 nt2 340 709 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0273_RS0111760GCF_000269565#HMPREF0273_RS0111760
HKHybrid
2 335 560-2 338 286 nt · Forward (+)
HMPREF0273_RS0111770GCF_000269565#HMPREF0273_RS0111770
RRRpfGCurrent focus
2 338 700-2 340 709 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039752855#ABHS30_RS12105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0033452
Simplified PFAM architecture for RROC_0033452
PFAM domain coverage: 385 / 680 aa (56.6%)
1 aa680 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[18-124] | HD_5[205-333] | GGDEF[526-674]
- Domain count: 3
- Matched identifier: RROC_0033452
- Positioned domains: Response_reg 18-124 ; HD_5 205-333 ; GGDEF 526-674
Cluster members and taxonomy
Representative gene: GCF_039752855#ABHS30_RS12105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key