Gene detail

HMPREF0273_RS0111760

Histidine kinase, Hybrid

Coprobacillus cateniformis · GCF_000269565

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength908 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000269565#HMPREF0273_RS0111760Stable P2CS identifier used across views.

GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus

Selected clusterHKOC_0393767Run 6 · 5 sequences · id 100% · cov 80%

External referencesWP_008789293.1 · E7GBQ2 · MIST4 HMPREF0273_RS0111760RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

PAS_9HisKAHATPase_cResponse_reg

Protein length908 aaLength used to scale native and Biotite-like views.

Annotated domains66 with usable coordinates.

Domain coverage612 / 908 aa (67.4%)Merged over positioned domains only.

Domain description2 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa908 aa

Domain-by-domain annotation6 items

1 PAS_9#1

23-118 aa · 96 aa · 10.6% of protein

Raw tokenPAS_9:23:0.000000101:118:98:102

2 PAS_9#2

277-373 aa · 97 aa · 10.7% of protein

Raw tokenPAS_9:277:0.000000296:373:97:102

3 HisKA#3

398-464 aa · 67 aa · 7.4% of protein

Raw tokenHisKA:398:1.68e-16:464:67:64

4 HATPase_c#4

511-628 aa · 118 aa · 13.0% of protein

Raw tokenHATPase_c:511:6.44e-31:628:118:109

5 Response_reg#5

645-760 aa · 116 aa · 12.8% of protein

Raw tokenResponse_reg:645:5.24e-23:760:116:111

6 Response_reg#6

788-905 aa · 118 aa · 13.0% of protein

Raw tokenResponse_reg:788:9.85e-29:905:118:111

Raw architecture: PAS_9:23:0.000000101:118:98:102#PAS_9:277:0.000000296:373:97:102#HisKA:398:1.68e-16:464:67:64#HATPase_c:511:6.44e-31:628:118:109#Response_reg:645:5.24e-23:760:116:111#Response_reg:788:9.85e-29:905:118:111
Domain description: 2 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000269565::NZ_AKCB01000001.1::G00027

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span2335560-2340709Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_008789293.1

Context group IDGCF_000269565::NZ_AKCB01000001.1::G00027

Context members

HMPREF0273_RS0111760HMPREF0273_RS0111770

Partner locus tags

HMPREF0273_RS0111760HMPREF0273_RS0111770

Partner protein IDs

WP_008789293.1 WP_236916397.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_008789293.1Primary protein accession used for annex mappings.

UniProt accessionE7GBQ2Primary UniProt accession resolved in the annex database.

UniProt IDE7GBQ2_9FIRMDisplay identifier provided by UniProt.

GO / PubMed4 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005886 GO:0005524 GO:0009927 GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagHMPREF0273_RS0111760Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.

Genomic interval2 335 560-2 338 286 nt2 727 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span2 335 560-2 340 709 ntGCF_000269565::NZ_AKCB01000001.1::G00027

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000269565::NZ_AKCB01000001.1::G00027

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.

Neighborhood span2 335 560-2 340 709 nt5 150 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

2 335 560 nt2 340 709 nt

+-HMPREF0273_RS0111760 HMPREF0273_RS0111770

Neighborhood gene cards

2 genes in the current local neighborhood.

HMPREF0273_RS0111760GCF_000269565#HMPREF0273_RS0111760

HKHybridCurrent focus

2 335 560-2 338 286 nt · Forward (+)

RefSeq WP_008789293.1

Open current gene

HMPREF0273_RS0111770GCF_000269565#HMPREF0273_RS0111770

RRRpfG

2 338 700-2 340 709 nt · Forward (+)

RefSeq WP_236916397.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0393767HK

Run 65 sequencesid 100%cov 80%

PFAM PAS_9 + PAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg

Representative GCF_000186525#HMPREF9488_RS10980

Selected clusterHKOC_0393767Run 6 · HK · 5 sequences

Representative sequenceGCF_000186525#HMPREF9488_RS10980Use this link to inspect the representative gene detail.

PFAM architecturePAS_9 + PAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg7 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_0393767

Simplified PFAM architecture for HKOC_0393767

PFAM domain coverage: 648 / 908 aa (71.4%)

1 aa908 aa

PAS_9PAS_9PAS_3HisKAHATPase_cResponse_regResponse_reg

Simplified architecture: PAS_9 + PAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
Raw architecture: PAS_9[24-118] | PAS_9[153-219] | PAS_3[280-349] | HisKA[398-464] | HATPase_c[512-628] | Response_reg[645-759] | Response_reg[788-904]
Domain count: 7
Matched identifier: HKOC_0393767
Positioned domains: PAS_9 24-118 ; PAS_9 153-219 ; PAS_3 280-349 ; HisKA 398-464 ; HATPase_c 512-628 ; Response_reg 645-759 ; Response_reg 788-904

Cluster members and taxonomy

Representative gene: GCF_000186525#HMPREF9488_RS10980

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565

AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid

Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis

Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key