1 HAMP#1
360-424 aa · 65 aa · 10.0% of protein
Raw token
HAMP:360:0.00000000000000106:424:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0111750
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000269565
ClassHKTypeClassicLength652 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000269565#HMPREF0273_RS0111750Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length652 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 652 aa (35.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa652 aa
Domain-by-domain annotation3 items
2 HisKA#2
443-507 aa · 65 aa · 10.0% of protein
Raw token
HisKA:443:0.0000000000000108:507:65:643 HATPase_c#3
551-652 aa · 102 aa · 15.6% of protein
Raw token
HATPase_c:551:0.00000000000000145:652:106:109- Raw architecture: HAMP:360:0.00000000000000106:424:69:69#HisKA:443:0.0000000000000108:507:65:64#HATPase_c:551:0.00000000000000145:652:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000269565::NZ_AKCB01000001.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2331252-2333876Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00026Context members
HMPREF0273_RS0111745HMPREF0273_RS0111750
Partner locus tags
HMPREF0273_RS0111745HMPREF0273_RS0111750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008789291.1Primary protein accession used for annex mappings.
UniProt accessionE7GBQ0Primary UniProt accession resolved in the annex database.
UniProt IDE7GBQ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0111750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 331 918-2 333 876 nt1 959 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 331 252-2 333 876 ntGCF_000269565::NZ_AKCB01000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 331 252-2 333 876 nt2 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 331 252 nt2 333 876 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0273_RS0111745GCF_000269565#HMPREF0273_RS0111745
RROmpR
2 331 252-2 331 911 nt · Forward (+)
HMPREF0273_RS0111750GCF_000269565#HMPREF0273_RS0111750
HKClassicCurrent focus
2 331 918-2 333 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS10970Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0892016
Simplified PFAM architecture for HKOC_0892016
PFAM domain coverage: 212 / 652 aa (32.5%)
1 aa652 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[373-423] | HisKA[443-506] | HATPase_c[554-650]
- Domain count: 3
- Matched identifier: HKOC_0892016
- Positioned domains: HAMP 373-423 ; HisKA 443-506 ; HATPase_c 554-650
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS10970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key