1 Response_reg#1
6-110 aa · 105 aa · 19.1% of protein
Raw token
Response_reg:6:2.76e-27:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0109680
Response regulator, RpfG family
Coprobacillus cateniformis · GCF_000269565
ClassRRTypeRpfGLength551 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000269565#HMPREF0273_RS0109680Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length551 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 551 aa (69.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa551 aa
Domain-by-domain annotation3 items
2 HD#2
167-300 aa · 134 aa · 24.3% of protein
Raw token
HD:167:0.000000000000157:300:134:1103 GGDEF#3
389-531 aa · 143 aa · 26.0% of protein
Raw token
GGDEF:389:9.2e-38:531:156:160- Raw architecture: Response_reg:6:2.76e-27:110:106:111#HD:167:0.000000000000157:300:134:110#GGDEF:389:9.2e-38:531:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000269565::NZ_AKCB01000001.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1898510-1900165Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00021Context members
HMPREF0273_RS0109680
Partner locus tags
HMPREF0273_RS0109680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_017143994.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0109680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 898 510-1 900 165 nt1 656 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 898 510-1 900 165 ntGCF_000269565::NZ_AKCB01000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 898 510-1 900 165 nt1 656 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 898 510 nt1 900 165 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0273_RS0109680GCF_000269565#HMPREF0273_RS0109680
RRRpfGCurrent focus
1 898 510-1 900 165 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000269565#HMPREF0273_RS0109680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0072546
Simplified PFAM architecture for RROC_0072546
PFAM domain coverage: 377 / 551 aa (68.4%)
1 aa551 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-116] | HD_5[199-320] | GGDEF[389-532]
- Domain count: 3
- Matched identifier: RROC_0072546
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; HD_5 199-320 ; HD_5 199-320 ; GGDEF 389-532 ; GGDEF 389-532
Cluster members and taxonomy
Representative gene: GCF_000269565#HMPREF0273_RS0109680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key