1 sCache_like#1
54-129 aa · 76 aa · 13.5% of protein
Raw token
sCache_like:54:0.0000351:129:76:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0109400
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000269565
ClassHKTypeClassicLength562 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000269565#HMPREF0273_RS0109400Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length562 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 562 aa (45.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa562 aa
Domain-by-domain annotation3 items
2 HisKA#2
335-401 aa · 67 aa · 11.9% of protein
Raw token
HisKA:335:9.28e-18:401:67:643 HATPase_c#3
446-555 aa · 110 aa · 19.6% of protein
Raw token
HATPase_c:446:1.27e-29:555:110:109- Raw architecture: sCache_like:54:0.0000351:129:76:114#HisKA:335:9.28e-18:401:67:64#HATPase_c:446:1.27e-29:555:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000269565::NZ_AKCB01000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1844756-1847123Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00019Context members
HMPREF0273_RS0109400HMPREF0273_RS0109405
Partner locus tags
HMPREF0273_RS0109400HMPREF0273_RS0109405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790714.1Primary protein accession used for annex mappings.
UniProt accessionE7GFT9Primary UniProt accession resolved in the annex database.
UniProt IDE7GFT9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0109400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 844 756-1 846 444 nt1 689 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 844 756-1 847 123 ntGCF_000269565::NZ_AKCB01000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 844 756-1 847 123 nt2 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 844 756 nt1 847 123 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0273_RS0109400GCF_000269565#HMPREF0273_RS0109400
HKClassicCurrent focus
1 844 756-1 846 444 nt · Reverse (-)
HMPREF0273_RS0109405GCF_000269565#HMPREF0273_RS0109405
RROmpR
1 846 437-1 847 123 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS18365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1249214
Simplified PFAM architecture for HKOC_1249214
PFAM domain coverage: 178 / 562 aa (31.7%)
1 aa562 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[335-401] | HATPase_c[447-557]
- Domain count: 2
- Matched identifier: HKOC_1249214
- Positioned domains: HisKA 335-401 ; HATPase_c 447-557
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS18365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key