1 HisKA#1
85-145 aa · 61 aa · 20.5% of protein
Raw token
HisKA:85:0.00000000523:145:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0109200
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000269565
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000269565#HMPREF0273_RS0109200Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 298 aa (54.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-292 aa · 101 aa · 33.9% of protein
Raw token
HATPase_c:192:1.35e-16:292:111:109- Raw architecture: HisKA:85:0.00000000523:145:61:64#HATPase_c:192:1.35e-16:292:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000269565::NZ_AKCB01000001.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1810111-1811007Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00017Context members
HMPREF0273_RS0109200
Partner locus tags
HMPREF0273_RS0109200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790677.1Primary protein accession used for annex mappings.
UniProt accessionE7GFQ2Primary UniProt accession resolved in the annex database.
UniProt IDE7GFQ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0109200Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 810 111-1 811 007 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 810 111-1 811 007 ntGCF_000269565::NZ_AKCB01000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 810 111-1 811 007 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 810 111 nt1 811 007 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0273_RS0109200GCF_000269565#HMPREF0273_RS0109200
HKClassicCurrent focus
1 810 111-1 811 007 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS18170Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888651
Simplified PFAM architecture for HKOC_2888651
PFAM domain coverage: 159 / 298 aa (53.4%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[84-144] | HATPase_c[193-290]
- Domain count: 2
- Matched identifier: HKOC_2888651
- Positioned domains: HisKA 84-144 ; HATPase_c 193-290
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS18170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key