1 HAMP#1
131-202 aa · 72 aa · 16.9% of protein
Raw token
HAMP:131:0.000000412:202:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0273_RS0103925
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000269565
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000269565#HMPREF0273_RS0103925Stable P2CS identifier used across views.
GenomeGCF_000269565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 425 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HisKA#2
214-270 aa · 57 aa · 13.4% of protein
Raw token
HisKA:214:0.0000000000496:270:57:643 HATPase_c#3
319-424 aa · 106 aa · 24.9% of protein
Raw token
HATPase_c:319:5.11e-25:424:108:109- Raw architecture: HAMP:131:0.000000412:202:72:69#HisKA:214:0.0000000000496:270:57:64#HATPase_c:319:5.11e-25:424:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000269565::NZ_AKCB01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span743321-745275Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000269565::NZ_AKCB01000001.1::G00006Context members
HMPREF0273_RS0103920HMPREF0273_RS0103925
Partner locus tags
HMPREF0273_RS0103920HMPREF0273_RS0103925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790522.1Primary protein accession used for annex mappings.
UniProt accessionE7GF97Primary UniProt accession resolved in the annex database.
UniProt IDE7GF97_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0273_RS0103925Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKCB01000001.1Sequence record reported by the local genomic context database.
Genomic interval743 998-745 275 nt1 278 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span743 321-745 275 ntGCF_000269565::NZ_AKCB01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000269565::NZ_AKCB01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKCB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span743 321-745 275 nt1 955 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
743 321 nt745 275 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0273_RS0103920GCF_000269565#HMPREF0273_RS0103920
RROmpR
743 321-744 001 nt · Forward (+)
HMPREF0273_RS0103925GCF_000269565#HMPREF0273_RS0103925
HKClassicCurrent focus
743 998-745 275 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS17355Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2216072
Simplified PFAM architecture for HKOC_2216072
PFAM domain coverage: 164 / 425 aa (38.6%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[215-272] | HATPase_c[319-424]
- Domain count: 2
- Matched identifier: HKOC_2216072
- Positioned domains: HisKA 215-272 ; HATPase_c 319-424
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS17355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000269565
AssemblyPB_Copr_sp_D6_V1 · Contigreference genome · haploid
Genome composition3 861 289 bp · 31,5% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key