1 Response_reg#1
1-87 aa · 87 aa · 45.8% of protein
Raw token
Response_reg:1:4.52e-23:87:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1315_RS10385
Response regulator NarL family
Bifidobacterium longum subsp. longum 2-2B · GCF_000261205
ClassRRTypeNarLLength190 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000261205#HMPREF1315_RS10385Stable P2CS identifier used across views.
GenomeGCF_000261205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length190 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 190 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa190 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
125-181 aa · 57 aa · 30.0% of protein
Raw token
HTH_LUXR:125:0.00000000000000153:181:58:58- Raw architecture: Response_reg:1:4.52e-23:87:87:111#HTH_LUXR:125:0.00000000000000153:181:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000261205::NZ_AJTJ01000010.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1315_1020RefSeq proteinWP_032736806.1
Context group ID
GCF_000261205::NZ_AJTJ01000010.1::G00001Context members
HMPREF1315_RS10385
Partner locus tags
HMPREF1315_RS10385
Partner old locus tags
HMPREF1315_1020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032736806.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1315_RS10385Primary locus identifier stored in the genes table.
Old locus tagHMPREF1315_1020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AJTJ01000010.1Sequence record reported by the local genomic context database.
Genomic interval1-573 nt573 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-573 ntGCF_000261205::NZ_AJTJ01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000261205::NZ_AJTJ01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AJTJ01000010.1All displayed genes belong to this local TCS context.
Neighborhood span1-573 nt573 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt573 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1315_RS10385GCF_000261205#HMPREF1315_RS10385
RRNarLCurrent focus
1-573 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333635#MCC10043_RS07250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0705851
Simplified PFAM architecture for RROC_0705851
PFAM domain coverage: 165 / 252 aa (65.5%)
1 aa252 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[36-149] | Sigma70_r4_2[181-231]
- Domain count: 2
- Matched identifier: RROC_0705851
- Positioned domains: Response_reg 36-149 ; Response_reg 36-149 ; Sigma70_r4_2 181-231 ; Sigma70_r4_2 181-231
Cluster members and taxonomy
Representative gene: GCF_004333635#MCC10043_RS07250
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_004333635#MCC10043_RS07250 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 745 · GCF_000261205
AssemblyBlongum22Bv1.0 · Contighaploid
Genome composition2 625 697 bp · 59,5% GCBifidobacterium longum subsp. longum 2-2B
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key