1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:1.43e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
W75_RS0113260
Response regulator OmpR family
Enterococcus faecium LCT-EF90 · GCF_000258325
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000258325#W75_RS0113260Stable P2CS identifier used across views.
GenomeGCF_000258325Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.09e-32:223:76:77- Raw architecture: Response_reg:3:1.43e-34:112:111:111#Trans_reg_C:148:1.09e-32:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000258325::NZ_JH636591.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53933-56022Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000258325::NZ_JH636591.1::G00017Context members
W75_RS0113255W75_RS0113260
Partner locus tags
W75_RS0113255W75_RS0113260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002328830.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4QK90Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4QK90_9ENTEDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagW75_RS0113260Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JH636591.1Sequence record reported by the local genomic context database.
Genomic interval55 339-56 022 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 933-56 022 ntGCF_000258325::NZ_JH636591.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000258325::NZ_JH636591.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH636591.1All displayed genes belong to this local TCS context.
Neighborhood span53 933-56 022 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 933 nt56 022 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
W75_RS0113255GCF_000258325#W75_RS0113255
HKClassic
53 933-55 342 nt · Reverse (-)
W75_RS0113260GCF_000258325#W75_RS0113260
RROmpRCurrent focus
55 339-56 022 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000258325#W75_RS0113260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1355314
Simplified PFAM architecture for RROC_1355314
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1355314
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000258325#W75_RS0113260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 167 697 · GCF_000258325
AssemblyEnterococcus faecium LCT-EF90,version 1.0 · Scaffoldhaploid
Genome composition2 773 995 bp · 38,0% GCEnterococcus faecium LCT-EF90
Signal transduction countsGenes 32 · HK 17 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key