1 Response_reg#1
3-122 aa · 120 aa · 48.8% of protein
Raw token
Response_reg:3:0.000000021:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SALIVB_RS08595
Response regulator LytTR family
Streptococcus salivarius CCHSS3 · GCF_000253335
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000253335#SALIVB_RS08595Stable P2CS identifier used across views.
GenomeGCF_000253335Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage212 / 246 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 37.4% of protein
Raw token
LytTR:150:5.19e-19:241:97:98- Raw architecture: Response_reg:3:0.000000021:122:120:111#LytTR:150:5.19e-19:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000253335::NC_015760.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1877211-1877951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSALIVB_1793RefSeq proteinWP_013991119.1
Context group ID
GCF_000253335::NC_015760.1::G00014Context members
SALIVB_RS08595
Partner locus tags
SALIVB_RS08595
Partner old locus tags
SALIVB_1793
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013991119.1Primary protein accession used for annex mappings.
UniProt accessionA0AB37CLS2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB37CLS2_STRSLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSALIVB_RS08595Primary locus identifier stored in the genes table.
Old locus tagSALIVB_1793Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_015760.1Sequence record reported by the local genomic context database.
Genomic interval1 877 211-1 877 951 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 877 211-1 877 951 ntGCF_000253335::NC_015760.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000253335::NC_015760.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_015760.1All displayed genes belong to this local TCS context.
Neighborhood span1 877 211-1 877 951 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 877 211 nt1 877 951 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SALIVB_RS08595GCF_000253335#SALIVB_RS08595
RRLytTRCurrent focus
1 877 211-1 877 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000253335#SALIVB_RS08595The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769676
Simplified PFAM architecture for RROC_0769676
PFAM domain coverage: 194 / 246 aa (78.9%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-122] | LytTR[150-239]
- Domain count: 2
- Matched identifier: RROC_0769676
- Positioned domains: Response_reg 19-122 ; Response_reg 19-122 ; LytTR 150-239 ; LytTR 150-239
Cluster members and taxonomy
Representative gene: GCF_000253335#SALIVB_RS08595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 048 332 · GCF_000253335
AssemblyASM25333v1 · Complete Genomehaploid
Genome composition2 217 184 bp · 40,0% GCStreptococcus salivarius CCHSS3
Signal transduction countsGenes 28 · HK 13 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key