1 Response_reg#1
9-119 aa · 111 aa · 55.8% of protein
Raw token
Response_reg:9:1.08e-36:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CECT7263_RS01835
Response regulator OmpR family
Bifidobacterium breve CECT 7263 · GCF_000247755
ClassRRTypeOmpRLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000247755#CECT7263_RS01835Stable P2CS identifier used across views.
GenomeGCF_000247755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 199 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-199 aa · 47 aa · 23.6% of protein
Raw token
Trans_reg_C:153:7.92e-18:199:47:77- Raw architecture: Response_reg:9:1.08e-36:119:111:111#Trans_reg_C:153:7.92e-18:199:47:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000247755::NZ_AFVV01000027.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span36776-37372Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCECT7263_24925RefSeq proteinWP_003832986.1
Context group ID
GCF_000247755::NZ_AFVV01000027.1::G00005Context members
CECT7263_RS01835
Partner locus tags
CECT7263_RS01835
Partner old locus tags
CECT7263_24925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003832986.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCECT7263_RS01835Primary locus identifier stored in the genes table.
Old locus tagCECT7263_24925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AFVV01000027.1Sequence record reported by the local genomic context database.
Genomic interval36 776-37 372 nt597 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 776-37 372 ntGCF_000247755::NZ_AFVV01000027.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000247755::NZ_AFVV01000027.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AFVV01000027.1All displayed genes belong to this local TCS context.
Neighborhood span36 776-37 372 nt597 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 776 nt37 372 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CECT7263_RS01835GCF_000247755#CECT7263_RS01835
RROmpRCurrent focus
36 776-37 372 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569015#B7019_RS07380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0825964
Simplified PFAM architecture for RROC_0825964
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0825964
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; Trans_reg_C 153-237 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_000569015#B7019_RS07380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 036 735 · GCF_000247755
AssemblyASM24775v2 · Contighaploid
Genome composition2 314 396 bp · 59,0% GCBifidobacterium breve CECT 7263
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key