1 Response_reg#1
8-109 aa · 102 aa · 38.8% of protein
Raw token
Response_reg:8:6.93e-20:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CECT7263_RS01650
Response regulator LytTR family
Bifidobacterium breve CECT 7263 · GCF_000247755
ClassRRTypeLytTRLength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000247755#CECT7263_RS01650Stable P2CS identifier used across views.
GenomeGCF_000247755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 263 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
139-226 aa · 88 aa · 33.5% of protein
Raw token
LytTR:139:3.35e-20:226:93:98- Raw architecture: Response_reg:8:6.93e-20:109:107:111#LytTR:139:3.35e-20:226:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000247755::NZ_AFVV01000028.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span49444-50235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCECT7263_28647RefSeq proteinWP_015439358.1
Context group ID
GCF_000247755::NZ_AFVV01000028.1::G00004Context members
CECT7263_RS01650
Partner locus tags
CECT7263_RS01650
Partner old locus tags
CECT7263_28647
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015439358.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP9G7W2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP9G7W2_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCECT7263_RS01650Primary locus identifier stored in the genes table.
Old locus tagCECT7263_28647Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AFVV01000028.1Sequence record reported by the local genomic context database.
Genomic interval49 444-50 235 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 444-50 235 ntGCF_000247755::NZ_AFVV01000028.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000247755::NZ_AFVV01000028.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AFVV01000028.1All displayed genes belong to this local TCS context.
Neighborhood span49 444-50 235 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 444 nt50 235 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CECT7263_RS01650GCF_000247755#CECT7263_RS01650
RRLytTRCurrent focus
49 444-50 235 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS09290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639440
Simplified PFAM architecture for RROC_0639440
PFAM domain coverage: 193 / 263 aa (73.4%)
1 aa263 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0639440
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS09290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 036 735 · GCF_000247755
AssemblyASM24775v2 · Contighaploid
Genome composition2 314 396 bp · 59,0% GCBifidobacterium breve CECT 7263
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key