1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000391:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9945_RS03855
Histidine kinase, Classic
Clostridioides difficile 70-100-2010 · GCF_000235905
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000235905#HMPREF9945_RS03855Stable P2CS identifier used across views.
GenomeGCF_000235905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 467 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.6% of protein
Raw token
HisKA:245:0.0000000000000199:312:68:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:9.9e-27:465:108:109- Raw architecture: HAMP:166:0.00000391:232:69:69#HisKA:245:0.0000000000000199:312:68:64#HATPase_c:359:9.9e-27:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000235905::NZ_JH379325.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span185689-187821Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9945_02937RefSeq proteinWP_004454490.1
Context group ID
GCF_000235905::NZ_JH379325.1::G00046Context members
HMPREF9945_RS03855HMPREF9945_RS03850
Partner locus tags
HMPREF9945_RS03855HMPREF9945_RS03850
Partner old locus tags
HMPREF9945_02937HMPREF9945_02938
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004454490.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3HD92Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3HD92_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9945_RS03855Primary locus identifier stored in the genes table.
Old locus tagHMPREF9945_02937Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH379325.1Sequence record reported by the local genomic context database.
Genomic interval185 689-187 092 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span185 689-187 821 ntGCF_000235905::NZ_JH379325.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000235905::NZ_JH379325.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH379325.1All displayed genes belong to this local TCS context.
Neighborhood span185 689-187 821 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
185 689 nt187 821 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9945_RS03855GCF_000235905#HMPREF9945_RS03855
HKClassicCurrent focus
185 689-187 092 nt · Reverse (-)
HMPREF9945_RS03850GCF_000235905#HMPREF9945_RS03850
RROmpR
187 096-187 821 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS03855The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747926
Simplified PFAM architecture for HKOC_1747926
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747926
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS03855
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 189 total members. Page 1 / 4.
GCF_000235905#HMPREF9945_RS03855 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 002 369 · GCF_000235905
AssemblyASM23590v1 · Scaffoldhaploid
Genome composition4 008 217 bp · 28,5% GCClostridioides difficile 70-100-2010
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key